Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKSNKSLAMIVVAIIIVGVLAFQFMNHTGPFKKGTNHETVQDLNGKDKVHVQRVVDGDTFIANQNGKEIKVRLIGVDTPETVKPNTPVQPFGKEASNYSKKTLTN-QDVYLEYDK-EKQDRYGRTLAYVWISKDRMYNKELVEKGLAREKY-FSPNGKYRNVFIEAQNKAKQQKLNIWSK |
3NK9 Chain:A ((9-135)) | ---------------------------------------------KEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPEF------NEKYGPEASAFTKKMVENAKKIEAEFDKGQRTDKYGRGLAYIY-ADGKMVNEALVRQGLAKVAYVYKGNNTHEQLLRKAEAQAKKEKLNIWS- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NK9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 3095 for 977 contacts (3.2/contact) +
2D Compatibility (PS) -13397 + (NN) -5186 + (LL) 3536
1D Compatibility (HY) -8800 + (ID) 2400
Total energy: -23152.0 ( -23.70 by residue)
QMean score : 0.500
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