Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE
2HVD Chain:B ((4-152))
CERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE
General information:
TITO was launched using:
RESULT:
Template:
2HVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65781 for 1121 contacts (-58.7/contact) +
2D Compatibility (PS) -16234 + (NN) -6395 + (LL) 0
1D Compatibility (HY) -17200 + (ID) 3850
Total energy: -109460.0 ( -97.64 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_2HVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HVD-query.scw
PDB file :
Tito_Scwrl_2HVD.pdb
: