Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIAMANFKSAMPVFKSHAYLKELEKTLKPQHFDRVFVFPDFLGLLPNAFLHFTLGAQNAYPRDCGAFTGEITSKHLEELKIHTLLIGHSERRVLLKESPSFLKEKFDFFKGKNFKIVYCIGEDLTTREKGFRAVKEFLSEQLEN-IDL--NYSNLIVAYEPIWAIGTKKSASLEDIYLTHGFLKQILN--------QKTPLLYGGSVNAQNAKEILGIDSVDGLLIGSASLELENFKTIISFL
1LYX Chain:A ((59-244))
-----------------------------------------------------FSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQN--KTIEVITKQVKAFVDLIDNFDNVILVYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLK-ESFVDIIKSA
General information:
TITO was launched using:
RESULT:
Template:
1LYX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75939 for 1329 contacts (-57.1/contact) +
2D Compatibility (PS) -18614 + (NN) -5997 + (LL) 4728
1D Compatibility (HY) -13600 + (ID) 3400
Total energy: -112822.0 ( -84.89 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_1LYX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LYX-query.scw
PDB file :
Tito_Scwrl_1LYX.pdb
: