Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSHYIELTEENFESTI--KKGVALVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLVGVQTKVALKEQLNKLLG
4POB Chain:B ((15-117))
----VTVTDDSFQEDVVSSNKPVLVDFWATWCGPCKMVAPVLEEIAKDHGEALTIAKLDVDANPETARAFQVTSIPTLILFQNGEATKRIVGAKSKSALLRELDGVV-
General information:
TITO was launched using:
RESULT:
Template:
4POB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59143 for 734 contacts (-80.6/contact) +
2D Compatibility (PS) -10474 + (NN) -1763 + (LL) 144
1D Compatibility (HY) -8800 + (ID) 1850
Total energy: -81886.0 ( -111.56 by residue)
QMean score : 0.688
(partial model without unconserved sides chains):
PDB file :
Tito_4POB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4POB-query.scw
PDB file :
Tito_Scwrl_4POB.pdb
: