Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIKIQKIHPNALIPKYQTEGSSGFDLHAVEEVVIKPHSVGLVRIGICLSLEVGYELQVRTRSGLALNHQVMVLNSPGTVDNDYRGEIKVILANLSD-KDFKVQVGDRIAQGVVQKTYKAEFIECEQLDETSRGSGGFGSTGVSKA
1SLH Chain:B ((25-157))
--LAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEAGLASTSRGD------
General information:
TITO was launched using:
RESULT:
Template:
1SLH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69632 for 881 contacts (-79.0/contact) +
2D Compatibility (PS) -13755 + (NN) 150 + (LL) -88
1D Compatibility (HY) -8800 + (ID) 2550
Total energy: -94675.0 ( -107.46 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_1SLH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SLH-query.scw
PDB file :
Tito_Scwrl_1SLH.pdb
: