Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPKRMKCFSQKWLVFFVTHWLLLASLSHAKMAFESNIDTKALEAFGVNASFLSQMPGALKKVNKEEEWKK-----------LVKRFDVNYQFIPIIKNMLIGASVPQEFLFL---AMAESKFSSRAYSRKKAVGIWQFMPSTAKELGLKVNHYIDERRDPIKS--TQAAIAYLKRLYKQ-TGEWYLVAMAYN------YGLRKVQNAIKAAGTSD-------------------IKVLLDEDK--KYLPKETREYIRSILSLALKFNSLDNLKDKEYLLNR-----GARVSLV----GVPFKRHTSLVQVAKNLNLSLETLKSYNHQFRYNILPSKDPTYTIYIPYEKLALFKQRQLKQNKNAQANPKSPFITHVVLPKETLSSIAKRYQVSISSI---QLANNLKDSNIFIHQRLIIPTNKKLLAT--REF |
| 4JC0 Chain:A ((2-433)) | ---RVGIKVLGCPKNEADCEVLAGVLREGGHEIVFDVKDADVVVLDTCAFIEDAKRESIDEIFSFVDAKDQYGYKLVVKGCLVQRYYEELKKEIPEVDQWIGVADPEEIANAIETDLVPDRYRKRIDLEERPYAYVKISDGCDRGCT---FCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVGK--KLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDMWGSVILEH |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JC0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -46529 for 2627 contacts (-17.7/contact) +
2D Compatibility (PS) -38511 + (NN) -8895 + (LL) 556
1D Compatibility (HY) -2800 + (ID) 2300
Total energy: -98479.0 ( -37.49 by residue)
QMean score : 0.183
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