Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LTKLKKVMISVIAATLLLLAGCGSSAVIKTDAGSVTQDELYEAMKTTYGNEVVQQLTFKKILEDKYTVTEKEVNAEYKKYEEQYGDSFESTLSSNNLTKTSFKENLEYNLLVQKATEANMDVSESKLKAYYKTWEPDITVRHILVDDE---------------------ATAKEIQTKLKNG-EKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYALENKDDVSGIVKSTYGYHLIQLVKKTEKGTYAKEKANVKAAYIKSQLTSENMTAALKKELKAANIDIKDSDLKDAFADYTSTSSTSSTTTSN |
3TC5 Chain:A ((56-166)) | ---------------------------------------------------------------------------------------------------------------------------------------ARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCS-SAKARGDLGAFSRGQMQKPFEDASFALR-TGEMSGPVFTDSGIHIILRTE-------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TC5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -34690 for 642 contacts (-54.0/contact) +
2D Compatibility (PS) -9848 + (NN) -6811 + (LL) 15008
1D Compatibility (HY) -6400 + (ID) 1350
Total energy: -44091.0 ( -68.68 by residue)
QMean score : 0.683
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