Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIIFVWAQDRAGNIGKDNKMPWHLPGDLQFFKKTTTGKTLVMGRKTYESLGKALPNRKTIVLTRDQGLKLDDAEILHSKEAVLA-LAETGEPIYIVGGAEIYRLFMDVADQLIVTKIDAEFEADTAFPEVDWENFSEVAKEFHEKDEKNKYNYTFYTYERN
1ZDR Chain:B ((1-160))
MISHIVAMDENRVIGKDNRLPWHLPADLAYFKRVTMGHAIVMGRKTFEAIGRPLPGRDNVVVTGNRSFRPEGCLVLHSLEEVKQWIASRADEVFIIGGAELFRATMPIVDRLYVTKIFASFPGDTFYPPISDDEWEIVSYTPGGKDEKNPYEHAFIIYER-
General information:
TITO was launched using:
RESULT:
Template:
1ZDR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93020 for 1177 contacts (-79.0/contact) +
2D Compatibility (PS) -16636 + (NN) -4519 + (LL) -80
1D Compatibility (HY) -14800 + (ID) 3400
Total energy: -132455.0 ( -112.54 by residue)
QMean score : 0.644
(partial model without unconserved sides chains):
PDB file :
Tito_1ZDR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZDR-query.scw
PDB file :
Tito_Scwrl_1ZDR.pdb
: