Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKLVA-TAPRVAVLVEYNDREVLEDEVKIKVQFASPKHGTEVVDFRGISPFIDEEFSPEWNLFVSRETNSARGIVFGEFQLGNMVVGEVVERGSKVTEYALGDIVCS---------------------------------------------------YGPIMETVIVKAVDNYKLRKLPKGANWKNAVCYD-PAQFAMSGVRD-AHVRAGDYVVVVGLGAIGQIAIQLAKKAGASVVIGVDPLSHRREIAEKHGADATFDPITTD--VGLEVKRLTGKLGADSIIETSGNAAALQAALRGIAY-GGTISYVAFAKPFPEGFNLGREAHFNNAKIVFSRAASEPNPDYPRWDRKRIEETCWELLMNGYLDCSDIIDPVVPFADSAESYMKYVDQQPDLSIKMGITL |
2FZW Chain:A ((7-372)) | CKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCH-TDAYTLSGADPE-----------------------GCFPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVAD-IS--VAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMT-DGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGE-EIATRPFQLVTGRTWKGTAFGGW--------KSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFEL-MHSGK-SI-RTVVK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2FZW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -162883 for 2724 contacts (-59.8/contact) +
2D Compatibility (PS) -33627 + (NN) -10800 + (LL) 1652
1D Compatibility (HY) -8800 + (ID) 3100
Total energy: -217558.0 ( -79.87 by residue)
QMean score : 0.464
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