Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTLLEKINETRDFLQAKGVTAPEFGLILGSGLGELAEEIENPIVVDYADIPNWGQSTVVGHAGKLVYGDLSGRKVLALQGRFHFYEGNTMEIVTFPVRIMRALACHSVLVTNAAGGIG--YGPGTLMLIKDHINV---IGTNPLIGENLEEFGPRFPDMSDAYTATYRQKA----HQIAEKQNIKLEEGVYLGVSGPTYETPAEIRAFQTMGAQAVGMSTVPEVIVAAHSGLKVLGISAITN-FAAGFQS--ELNHEEVVEVTQRIKEDFKGLVKSLVAEL |
3GGS Chain:B ((30-304)) | ----EDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQIFDYGEIPNFPRSTVPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGLNPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQMGEQR--ELQEGTYVMVAGPSFQTVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSLITDKVIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMASI |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GGS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -156009 for 2126 contacts (-73.4/contact) +
2D Compatibility (PS) -27496 + (NN) -3740 + (LL) 736
1D Compatibility (HY) -28000 + (ID) 6300
Total energy: -220809.0 ( -103.86 by residue)
QMean score : 0.517
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