Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIKRRTQEERSAATREALITGARKLWGLRGYAEVGTPEIATEAGVTRGAMYHQFADKAALFRDVVEVVEQDVMARMATLVAASGAATPADAIRAAVDAWLEVS-GDPEVRQLILLDAPVVLGWAGFRDVAQRYSLGMTEQLITEAIRAGQLARQPVRPLAQVLIGALDEAAMFIATADDPKRARRETRQVLRRLIDGMLNG
3COL Chain:A ((10-196))
-------------NKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVYLYFKNKQALIDSVYARETNRILSTTDLDRLSDSTIDVTTRIRLYVQQVYDYSLANPDSLTIIQQIKALNGQ--------DADPNNIVANLLTAAIDAKVIKQLPVSLHMGVVFSTIHTHTTNISKGRY-AQDQYTFGDIFQMIWDAMKQD
General information:
TITO was launched using:
RESULT:
Template:
3COL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100807 for 1293 contacts (-78.0/contact) +
2D Compatibility (PS) -19368 + (NN) -9178 + (LL) 1856
1D Compatibility (HY) -8000 + (ID) 1450
Total energy: -136947.0 ( -105.91 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_3COL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3COL-query.scw
PDB file :
Tito_Scwrl_3COL.pdb
: