Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTKDAVAVVTGGASGLGLATTKRLLDAGAQVVVVDLRGDDVVG-------GLGDRARFAQADVTDEAAVSNALELAD-SLGPVRVVVNCAGTGNAIRVLSRDGVFPLAAFRKIVDINLVGTFNVLRLGAERIAKTEPIGEERGVIINTASVAAFDGQIGQAAYSASKGGVVGMTLPIARDLASK--LIRVVTIAPGLFDTPLLASLPAEAKASLGQQVPHP-SRLGNPDEYGALVLHIIENPMLNGEVIRLDGAIRMAPR
1ZK4 Chain:A ((8-232))
------VAIITGGTLGIGLAIATKFVEEGAKVMITGRHSD--VGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAG----IAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRM-KNKGLGAS---IINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPG-AEEAMSQRTKTPMGHIGEPNDIAYICVYLASN-------------------
General information:
TITO was launched using:
RESULT:
Template:
1ZK4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118835 for 1753 contacts (-67.8/contact) +
2D Compatibility (PS) -22510 + (NN) -7326 + (LL) 2164
1D Compatibility (HY) -12000 + (ID) 3900
Total energy: -162407.0 ( -92.65 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_1ZK4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZK4-query.scw
PDB file :
Tito_Scwrl_1ZK4.pdb
: