Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLITAIVKPFTLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVDFVPKVRIEVVVDDSIVDKVVDSIVRAARTGKIGDGKVWVSPVDTIVRVRTGERGHDAL
2J9E Chain:A ((3-114))
MKKVEAIIRPEKLEIVKKALSDAGYVGMTVSEVKGRGVQGGIVERY----YIVDLIPKVKIELVVKEEDVDNVIDIICENARTGNPGDGKIFVIPVERVVRVRTKEEGKEAL
General information:
TITO was launched using:
RESULT:
Template:
2J9E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58859 for 688 contacts (-85.6/contact) +
2D Compatibility (PS) -11671 + (NN) -1546 + (LL) 176
1D Compatibility (HY) -11600 + (ID) 2950
Total energy: -86450.0 ( -125.65 by residue)
QMean score : 0.589
(partial model without unconserved sides chains):
PDB file :
Tito_2J9E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J9E-query.scw
PDB file :
Tito_Scwrl_2J9E.pdb
: