Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKFYLVRHGKTQWNLEGRFQGANGDSPLLEEAIEELEELGQYLSS--IHFDAVYSSDLGRARDTVNILNDANS---CPKEIHYTPQLREWALGTLEGCKIATMQAIYPRQ-MTAFYQNPL----------------------QFKHDMFGAESLYQTTHRVESFLRSLASK---NYDKVLIVGHGANLTASIRSLLGYQYGSLHYKDKLDNASLTIIETHDFKDFNCLTWNDKSYLRQEVKMTH |
| 1RII Chain:A ((5-224)) | GSLVLLRHGESDWNALNLFTGW-VDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLALDSADRLWIP--VRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPPPPIERGSQFSQDADPRYADIGGG--PLTECLADVVARFLPYFTDVIVGDLRVGKTVLIVAHGNSLRALVKHLDQMSDDEI-VGLNIPTGIPLRYDLDSAMRPLVRGGTYLDPEAAAAGAAA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RII.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -65085 for 1513 contacts (-43.0/contact) +
2D Compatibility (PS) -20382 + (NN) -4467 + (LL) 264
1D Compatibility (HY) -5600 + (ID) 2100
Total energy: -97370.0 ( -64.36 by residue)
QMean score : 0.409
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