Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNRDFRVRDQLETFGVRVSALIIE----NQKLLLIYAP---HLDKYYLPGGALQV--GEDSNKAVAREVLEEIGLHSQVGDLAYIVENQFNIKRHHYHSVEFLYFVNLLGQAPESIKEGTHKRHFVWLPIKELTKIDCNPNFLAQDLIEWPGHVVHKIVQN
3GZ5 Chain:A ((21-157))
--------------QLLTVDAVLFTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCTVGNNSR--DARGWSVTVCYTALMSYQ-ACQIQ-IASVSDVKWWPLADVLQMPLAFD-HLQLIEQARERLTQKALYS
General information:
TITO was launched using:
RESULT:
Template:
3GZ5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63469 for 973 contacts (-65.2/contact) +
2D Compatibility (PS) -14150 + (NN) -3745 + (LL) 1764
1D Compatibility (HY) -6400 + (ID) 1200
Total energy: -87200.0 ( -89.62 by residue)
QMean score : 0.320
(partial model without unconserved sides chains):
PDB file :
Tito_3GZ5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GZ5-query.scw
PDB file :
Tito_Scwrl_3GZ5.pdb
: