Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQDYISYIRSKVGHETIFLTYSGGILTDGKGRVLLQLRADKNSWGIIGGCMELGESSVDTLKREFFEETGLRVEPIRLLNVYTNFQDSYPNGDKAQTVGFIYEVSCPKPVNIEGFHNEETLQLDYFSKEDVKNITIVN-EQHQLILDEYFSQTFQMGR
1VCD Chain:A ((2-123))
-------------------ELGAGGVVFNAKREVLLLRDR-MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNP-----KGVEREVHWFLMRGEGA--PRL--EEGMTGAGWFSPEEARA--LLAFPEDLGLLEVALERLPL---
General information:
TITO was launched using:
RESULT:
Template:
1VCD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53572 for 912 contacts (-58.7/contact) +
2D Compatibility (PS) -12862 + (NN) -1440 + (LL) 2016
1D Compatibility (HY) -400 + (ID) 1300
Total energy: -67558.0 ( -74.08 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_1VCD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VCD-query.scw
PDB file :
Tito_Scwrl_1VCD.pdb
: