Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFLQGDTNIAYLHENNVTIWDEWADE------------NGDLGPVYGKQWRAWPT--------------------------PDG--------RHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQF--YVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIFDY--------RF---EDFEIEGYDPHPGIKAPVAI |
| 3V8H Chain:A ((5-318)) | MKQYLDLVRTILDTGTWQSN--GIRTIGIPGAMLRFDLQQGFPAVTTKKLAFKSAIGELVGFLRATRSAAEFRALGCKVWDANANENAQWLANPYRRGADDLGDVYGVQWRRWPGYKVLDAHADAQIADATSRGFRIVARFEEGGADKVLLHKAIDQLRDCLDTIVRDPSSRRILFHGWNPAVLDEIALPACHLLYQFLPNVERREISLCLYIRSNDVGLGTPFNLAEGAALLTLVGRLTGYSPRWFTYFIGDAHIYENQLDMLKQQLEREPFESPRLELAERVPDYAKTGKYEPQWLERVEPSDFTLVGYRHH--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3V8H.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -172148 for 1960 contacts (-87.8/contact) +
2D Compatibility (PS) -27066 + (NN) -11659 + (LL) 652
1D Compatibility (HY) -19600 + (ID) 5150
Total energy: -234971.0 ( -119.88 by residue)
QMean score : 0.729
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