Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MESPASSQPASMPQSKGKSKRKKDLRISCMSKPPAPNPTPPRNLDSRTFITIGDRNFEVEADDLVTISELGRGAYGVVEKVRHAQSGTIMAVKRIRATVNSQEQKRLLMDLDINMRTVDCFYTVTFYGALFREGDVWICMELMDT-SLDKF--YRKVLDKNMT--IPEDILGEIAVSIVRALEHLHSKLSVIHRDVKPSNVLINKEGHVKMCDFGISGYLVDSVAKTMDAGCKPYMAPERINPELNQKGYNVKSDVWSLGITMIEMAILRFPYESWGTPFQQLKQVVEEPSPQLPADR----------FSPEFVDFTAQCLRKNPAERMSYLELMEHPFFTLHKTKKTDIAAFVKEILGEDS |
| 2PML Chain:X ((104-341)) | -------------------------------------------------------------------------------------------------------------------------YCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDKKIKG-SRGTYEFMPPEFFSNESSYNG--AKVDIWSLGICLYVMFYNVVPF-SLKISLVELFNNIRTKNIEYPLDRNHFLYPLTNFLSNEDIDFLKLFLRKNPAERITSEDALKHEW--LADTNIEDLREFSKELYKKRK |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PML.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -96633 for 1625 contacts (-59.5/contact) +
2D Compatibility (PS) -22311 + (NN) -2012 + (LL) 7376
1D Compatibility (HY) -20000 + (ID) 4100
Total energy: -137680.0 ( -84.73 by residue)
QMean score : 0.460
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