Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFRLEGRKFLVTGASGGIGQAIVKTMHKAGAILCVSGTKKETLEGVAKLYEKNIYI---LPCNLLNTEEVNQLINRASKLMGGLDGLVCNAGVTQDSLLLRMTDEAWQKVVDINLSSTFKLNREAYKKLTKNNWGRIINISSIIGLTGNAGQANYAASKAGIIAMSKSIAKEVASRNITVNCIAPGFMDTKMTKILTEEQKKKILDNIPMKRMGTGEEIAAGVLFLASDEAKYITGHVLNINGGLFM
4BNX Chain:D ((25-268))
---LQGKVALVTGASRGIGQAIALELGRLGAVVIGTATSASGAEKIAETLKANGVEGAGLVLDVSSDESVAATLEHIQQHLGQPLIVVNNAG--------RMKDDEWFDVVNTNLNSLYRLSKAVLRGMTKARWGRIINIGSVVGAMGNAGQTNYAAAKAGLEGFTRALAREVGSRAITVNAVAPGFIDTDMTRELPEAQREALLGQIPLGRLGQAEEIAKVVGFLASDGAAYVTGATVPVNGGMYM
General information:
TITO was launched using:
RESULT:
Template:
4BNX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149081 for 1929 contacts (-77.3/contact) +
2D Compatibility (PS) -25018 + (NN) -7186 + (LL) 1228
1D Compatibility (HY) -17600 + (ID) 5200
Total energy: -202857.0 ( -105.16 by residue)
QMean score : 0.608
(partial model without unconserved sides chains):
PDB file :
Tito_4BNX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BNX-query.scw
PDB file :
Tito_Scwrl_4BNX.pdb
: