Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKYFLRIDNVRVVGIDVEIKKQSSVCEQMRFRIGRTSLLSTLSRVSGVVERRNAIDILACINIKAQHGSIKLMATDLDISIFASLAADVLTE-GEVKVSAHTLHDIVKKLPADLDVNFEVNDQGKLLISYGNANFSLPNVVLNKLPVLEEGDHKYDFTLLNTDLIDLLNKTKFAVSLDDTRYNLNGIYLHTDEQFLYCVATDGHRLSCVKKPKPQNINSEFGVIIPRKTVIELLKVLDDCD-EINIKLSDRKIKFTCGKYIIISKLIDGAFPDYKCVIPASQDKQMVVESSKLASVIDRVSVVVSDRIKSIEFSLQEKSLTLHSNSQECSDATEFIEVDYNGAPIEIGFNSRYLLDALSCIK-SKCKFSLSDSSSATVITDENDPNVLYIVMPVRT |
| 3Q4J Chain:B ((1-365)) | ----------------------------MKFTVEREHLLKPLQQVSGPL--RPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE-RMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSH-SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3Q4J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -283860 for 2939 contacts (-96.6/contact) +
2D Compatibility (PS) -38870 + (NN) -10673 + (LL) 2780
1D Compatibility (HY) -31600 + (ID) 6000
Total energy: -368223.0 ( -125.29 by residue)
QMean score : 0.511
|
|
|