Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE
2HVD Chain:A ((4-152))
CERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE
General information:
TITO was launched using:
RESULT:
Template:
2HVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69296 for 1117 contacts (-62.0/contact) +
2D Compatibility (PS) -16211 + (NN) -8820 + (LL) 0
1D Compatibility (HY) -17200 + (ID) 3850
Total energy: -115377.0 ( -103.29 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_2HVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HVD-query.scw
PDB file :
Tito_Scwrl_2HVD.pdb
: