Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKMINKLIVPVTASALLLGACGASATDSKENTLISSKAGDVTVADTMKKIGKDQIANASFTEMLNKILADKYKNKVNDKKIDEQIEKMQKQYG-GKDKFEKALQQQGLTADKYKENLRTAAYHKELLSDKIK----ISDSEIKEDSK-----KASHILIKVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFEKALFKLKDGEVSEVVKSSFGYHIIKADKPTDFNSEKQSLKEKLVDQKVQKNPKLLTDAYKDLLKEYDVDFK--DRDIKSVVEDKILNPEKLKQGGAQGGQSGMSQ---------------------------------------------------------------------- |
| 1M5Y Chain:A ((25-427)) | ---VDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQ------LPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVTELNLSHILIPLPENPT---SDQVNEAESQARAIVDQARNGAD-FGKLAIAHSADQ-QALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDRAYRMLMNRKFSEEAASWMQEQRASAYVKILS |
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General information:
TITO was launched using:
| RESULT:
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Template: 1M5Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 62270 for 1937 contacts (32.1/contact) +
2D Compatibility (PS) -33003 + (NN) -11064 + (LL) 796
1D Compatibility (HY) -6000 + (ID) 2950
Total energy: 10049.0 ( 5.19 by residue)
QMean score : 0.377
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