Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIILMGLPGAGKGTQASEIVKKFPIPHISTGDMFRKAIKEETELGKEAKSYMDRGELVPDEVTVGIVKERISEDDA-KKGFLLDGFPRTIEQAEALNNIMSELDRNIDAVINIEVPEEELMNRLTGRRICESCGTTYHLVFNPPKVEGICDIDGGKLYQREDDNPETVANRLSVNIKQSKPILDFYDQKGVLKNIDGSKDISDVTKDVIDILDHL
1DVR Chain:B ((5-217))
IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKL---
General information:
TITO was launched using:
RESULT:
Template:
1DVR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76628 for 1555 contacts (-49.3/contact) +
2D Compatibility (PS) -23038 + (NN) -11636 + (LL) 144
1D Compatibility (HY) -16400 + (ID) 4350
Total energy: -131908.0 ( -84.83 by residue)
QMean score : 0.592
(partial model without unconserved sides chains):
PDB file :
Tito_1DVR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DVR-query.scw
PDB file :
Tito_Scwrl_1DVR.pdb
: