Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKICIAIDGPAAAGKSTVAKIVAKKLRFVYIDTGAMYRAVTYIALKNNIAYEDEKAIAALLQKTVIRFEP-GEVQQVFVGSENVTEVIRSIEVTNHVSIVAAHPSIREALQERQQVFATEGGIVMDGRDIGTAVLPNAELKIFLLASVEERAERRYKENMAKGFTGDLDQLKKEIEERDHLDYTRTHSPLKKADDAIEVDTTSMSIDQVANKILSLAELKINN-
1CKE Chain:A ((3-227))
-AIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQVKGFSVNFERLLAEI-------------KLVPAADALVLDSTTLSIEQVIEKALQYARQKLALA
General information:
TITO was launched using:
RESULT:
Template:
1CKE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129217 for 1659 contacts (-77.9/contact) +
2D Compatibility (PS) -23228 + (NN) -13997 + (LL) 896
1D Compatibility (HY) -14000 + (ID) 4300
Total energy: -183846.0 ( -110.82 by residue)
QMean score : 0.662
(partial model without unconserved sides chains):
PDB file :
Tito_1CKE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CKE-query.scw
PDB file :
Tito_Scwrl_1CKE.pdb
: