Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VKNTIKWIAIGFAGIILLPLLIVFFIYKKAVGKKDYNPEVLENLDKASQEFVKNTSPLSDVDSRYKYMRLATKALPSAKDIEIGDVENKKIDGPAGKIPIRIYTPQED-GPFEIIVYYHGGGFVLGGLQTHDAIARKLVQTTG-ARVVTVDYRLAPENPFPAAVEDAYAALLWVQNHRTSLRAKSSDIIVAGDSVGGNLATVVTQIAKSKGKPNITAQILLYPATDIFSRDASVLYPSMDEFAEGYVLTKESLDKFFKLYIANASDRKYDPLVAPIRSKDLVGLPKTFIATAEFDPLRDQGEAYAKKLKDAGVEVFAKRFEKVPHGFMTTNS--EATDETYELISEFLEEK |
2HM7 Chain:A ((45-308)) | ----------------------------------------------------------------------------------VAEVREFDMDLPGRTLKVRMYRPEGVEPPYPALVYYHGGSWVVGDLETHDPVCRVLAK-DGRAVVFSVDYRLAPEHKFPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTGYDPAHP---PASIEENAEGYLLTGGMMLWFRDQYLNSLEEL-THPWFSPVLYPDLSGLPPAYIATAQYDPLRDVGKLYAEALNKAGVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDA |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2HM7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -156958 for 2364 contacts (-66.4/contact) +
2D Compatibility (PS) -28265 + (NN) -17103 + (LL) 6772
1D Compatibility (HY) -20400 + (ID) 5350
Total energy: -221304.0 ( -93.61 by residue)
QMean score : 0.534
|
|
|