Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVMTDPIADFLTRIRNANMVKHDKLELPASKIKKEIAEILKREGFIRDVEYIEDD----------------------------------NAGTIRVFLKYGA--TGERVITGLKRISKPGLRVYAKSTEVPKVLNGLGIAIVSTSQGVLTDKEARAKQVGGEVLAYVW
3RF2 Chain:A ((4-168))
---VDPIADMFSAIKNAIMRRDDFLYVPSSKLKERILDVLKKEGFIQDWEALKGEKYEEEYKKMKELAEKSPNPKMKRYLKQLEEYNKGTQYPIKIYLKYLDPKKRKSAITNIVKVSKGGRRVYAGVRTMPYVKRGLGIAIVSTDAGVMTDHEARRMRKGGEVIAFVW
General information:
TITO was launched using:
RESULT:
Template:
3RF2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75767 for 921 contacts (-82.3/contact) +
2D Compatibility (PS) -13805 + (NN) -1103 + (LL) 608
1D Compatibility (HY) -12800 + (ID) 3100
Total energy: -105967.0 ( -115.06 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_3RF2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RF2-query.scw
PDB file :
Tito_Scwrl_3RF2.pdb
: