Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQTFFMIKPDGVKRGFIGEVISRIERRGFSIDRLEVRHADADILKRHYAELTDRPFFPTLVDYMTSGPVIIEVISGEEVISTWRTMMGSTNPKDALPGTIRGDFAQAPSPNQATCNIVHGSDSPESATREIAIWFNN
3NGU Chain:B ((4-134))
-ERTFIAVKPDGVQRGLVGEIIARFERKGYKLVALKILQPTTEQAQGHYKDLCSKPFFPALVKYFSSGPIVCMVWEGKNVVKSGRVLLGATNPADSQPGTIRGDFAV-----DVGRNVCHGSDSVESAEREIAFWFKA
General information:
TITO was launched using:
RESULT:
Template:
3NGU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73236 for 1007 contacts (-72.7/contact) +
2D Compatibility (PS) -13888 + (NN) -3883 + (LL) -36
1D Compatibility (HY) -12800 + (ID) 3200
Total energy: -107043.0 ( -106.30 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_3NGU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NGU-query.scw
PDB file :
Tito_Scwrl_3NGU.pdb
: