Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPVKDFMTKKLVYVSPDTTVAEAADLLREHHLRRLPVVE-NDQLLGLVTEGTMAEAQPSKATSLSIYEMNYLLNKTKIRDIMIKDIVTVSQYASLEDAIYLMMSRKIGVLPVVD-NGQLYGIITDRDVFKAFLEIAGYGQEGYRLVILADEGIGVLSKVLNRLSSANLSVKRLVIIERKAGKKAVEIQLEGYADKDVLKQELVFDDVIVETLEKTVKKPLS
3KPB Chain:A ((2-119))
-LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQN--------------KKTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFG----------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3KPB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85149 for 843 contacts (-101.0/contact) +
2D Compatibility (PS) -12667 + (NN) -4788 + (LL) 8756
1D Compatibility (HY) -8800 + (ID) 1650
Total energy: -104298.0 ( -123.72 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_3KPB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KPB-query.scw
PDB file :
Tito_Scwrl_3KPB.pdb
: