Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAVLILGGAGYIGSHMVDQLITQ-GKEKVIVVDNLVTGH---------R---QAV-----------HSDAIFYEGDLSDKTFMRQVFRENPDVDAVIHFAAFSLVAESMENPLKYFDNNTAGMIKLLEVMNECDIKNIVFSSTAATYGIPE--QVPILETAPQNPINPYGESKLMMETIMKWADQAYGIKFVALRYFNVAGDKPDGSIGEDHKPETHLLPIILQVAQG-----VRDKIMIFGDDYNTPDGTNVRDYVHPFDLADAHILAVDYLRQ------GNESNVFNLGSSTGFSNLQMLEAARRITGKEIPAQKAARRPGDPDTLIASSEKARQILGWEPKFDNI-DKIISSAWAWHSSHPNGYED |
| 1GY8 Chain:A ((3-382)) | MRVLVCGGAGYIGSHFVRALLRDTN-HSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPD-DKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKY-DTLEAIMETSWKFQRTHPNGYA- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GY8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -166102 for 2859 contacts (-58.1/contact) +
2D Compatibility (PS) -35804 + (NN) -20592 + (LL) 284
1D Compatibility (HY) -30400 + (ID) 7650
Total energy: -260264.0 ( -91.03 by residue)
QMean score : 0.571
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