Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKAKTLLMSCFLLLSVTACAPKDQAADMDYDQTKKMVVDILKTDDGKKAIKELLNDDAMNEALVIDQDAIKGTIEKTLTSKKGEEFWKNIFEDTDFAEGFAKTLQTEHEKVIKKLMKDPDYQKMLMSVMQDPGMDKKYSQLAKSQEFRSYLEEVINETLSSPLYKKQFEDELKKAAKDTAKESE
2LLV Chain:A ((127-197))
----------------------------------------------------------------------------------QPDLGLTQLFADPNLIENLKKNPKT------SEMMKDPQLVAKLIGYKQNPQAIGQD--LFTDPRLMTIMATLMGVDLN------------------------
General information:
TITO was launched using:
RESULT:
Template:
2LLV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10681 for 466 contacts (-22.9/contact) +
2D Compatibility (PS) -7742 + (NN) -5128 + (LL) 8868
1D Compatibility (HY) -4800 + (ID) 700
Total energy: -20183.0 ( -43.31 by residue)
QMean score : 0.362
(partial model without unconserved sides chains):
PDB file :
Tito_2LLV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LLV-query.scw
PDB file :
Tito_Scwrl_2LLV.pdb
: