Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALREFSSVKVGDQLPEKTYPLTRQDLVNYAGVSGDLNPIHWDDEIAKVVGLDTAIAHGMLTMGIGGGYVTSWVGDPGAVTEYNVRFTAVVPV---PNDGKGAELVFNGRVKSVDPESKSVTIALTATT-GGKKIFGRAIASAKLA
4V12 Chain:A ((207-342))
---LNFDDLKVGEELPVHTARLSRGDLVNYAGVAGDANPLHWDENIAKLAGQPDVIAHGMLTMGLGAGFVSSWSGDPGAITRYAVRLSQPAVVPAEG-----TEIEYSGRIKSLDPET-RTGVVIVAAKSGGRKIFGLATATIRF-
General information:
TITO was launched using:
RESULT:
Template:
4V12.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73567 for 982 contacts (-74.9/contact) +
2D Compatibility (PS) -14036 + (NN) -1635 + (LL) 300
1D Compatibility (HY) -10000 + (ID) 3450
Total energy: -102388.0 ( -104.26 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_4V12.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4V12-query.scw
PDB file :
Tito_Scwrl_4V12.pdb
: