Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIIPPRLKEPLYRLYELRLRQGLAASKSDLPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVVEEI--C--APANHWSVRTVGDLGLIGEEPARRLRGAVESTPEVASFHVNVAVGYGGRREIVDAVRALLSKELANGATAEELVDAVTVEGISENLYTS--GQPDPDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWPAFRHVDFLRALRDYSARHRSYGR
5HC8 Chain:A ((9-244))
---------------------------DEVTPNHVAIIIDGHRKWAKSRGVT-VQEGHQTGVNNWKHIISRASQLGIKLLTIWALSPQNFNRSKMEVDFLMRIYEDFLRSDVKELVTSQQDIQFSAIGDKSRLPEYLQDAISYAEGLSQANKGMHFILAVAYGGREDIVEAARKIAAKVEH----GILRPDDIDEATFEQHLMTNITKFPSPDLLIRAAGEQRLSNFFLWQLPFTEFYFTPKLFPDFGEADLLDALASYRCRYRGFGE
General information:
TITO was launched using:
RESULT:
Template:
5HC8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125845 for 1783 contacts (-70.6/contact) +
2D Compatibility (PS) -25147 + (NN) -11420 + (LL) 2288
1D Compatibility (HY) -15600 + (ID) 3650
Total energy: -179374.0 ( -100.60 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_5HC8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5HC8-query.scw
PDB file :
Tito_Scwrl_5HC8.pdb
: