Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGGTFDPIHYGHLVAASEVADLFDLDEVVFVPSGQPWQKGRQVSAAEHRYLMTVIATASNPRFSVSRVDIDRGGPTYTKDTLADLHALH-PDSELYFTTGADALASIMSWQGWEELFELARFVGVSRPGYELRNEHI------TSLL-------GQLAKDALTLVEIPALAISSTDCRQRAEQSRPLWYLMPDGVVQYVSKCRLYCGACDAGARSTTSLAAGNGL
1K4M Chain:A ((8-213))
FGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRPQPEANSVQRKHMLELAIADKPLFTLDERELKRNAPSYTAQTLKEWRQEQGPDVPLAFIIGQDSLLTFPTWYEYETILDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTHNPEDLHLQPAGKIYLAETPWFNISATIIRERLQNGESCEDLLPEPVLTYINQQGLYR-------------------
General information:
TITO was launched using:
RESULT:
Template:
1K4M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112181 for 1450 contacts (-77.4/contact) +
2D Compatibility (PS) -20194 + (NN) -6185 + (LL) 432
1D Compatibility (HY) -10800 + (ID) 2950
Total energy: -151878.0 ( -104.74 by residue)
QMean score : 0.426
(partial model without unconserved sides chains):
PDB file :
Tito_1K4M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K4M-query.scw
PDB file :
Tito_Scwrl_1K4M.pdb
: