Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAAVVKSVALAGRPTTPDRVHEVLGRSMLVDGLDIVLDLTRSGGSYLVDAIT-G--RRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPI-QGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKTQVC----GV-MAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPTTADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRSALPVVT |
| 4WYD Chain:A ((54-453)) | ----------------------------------SPVVAVAAHGAWLTLI-RDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMN-HVMF----GGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGL------PGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQV--PR------DYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARA-LP-AVTDVRVCGAIGVIECDRPVDLAVATPAALDRGVWLRPF-RNLVYAMPPYICTPAEITQITSAMVEVARLV- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4WYD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -254880 for 3461 contacts (-73.6/contact) +
2D Compatibility (PS) -42775 + (NN) -23251 + (LL) 2752
1D Compatibility (HY) -12400 + (ID) 4300
Total energy: -334854.0 ( -96.75 by residue)
QMean score : 0.460
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