Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNDAVPAGNFVPPLILHSDHGGSAMSSSAHRGR-ILHFLGDPAKLGDKAWEYFEDGLLWIEHGHVRALDHATYLLPQLPADLPLEEHPQRLLLPGFVDCHVHYPQLGVIASYGTQLLDWLETHTFPAEQRFADAGYAAAQAELFLDELLRHGTTTALVFGTVH-----AVSAEAFFQAAQKRRLRMIAGKVLMDRNAP------PALC-DTAASGYAESRALIERWHGN---GRLQYAVTPRFA-PTSSPEQLAAAARLLDEYPGVYLHTHLSENLKEVAWVGELFPQAQDYLDVYHRAGLVGERSVFAHGIHLSERECRCLAHKNAALAHCPSSNLFIGSGLFDLGRAQQYGIRVGIGSDVGGGT-SLSLLANLADAYKIQQLR-GTSLDPFQALYLATLGGARALDLDGLVGNFLPGREADFVALDLAATPMIAQRMEHARGLADTLFVLNTLGDDRAVAETWVMGERRHVKG |
| 2PAJ Chain:A ((10-457)) | ------------------------PSTLIRNAAAIMTGG--R-GTA-DDPSRVPGPDIRIVGDTIDAIGALAPR-----PGETIVDATDCVIYPAWVNTHHHLFQSLLKGEP--------------FRAL-FDERRFRLAARIGLIELARSGCATVADHNYVYYPGMPFDSSAILFEEAEKLGLRFVLLRGGATQTRQLEADLPTALRPETLDAYVADIERLAARYHDASPRAMRRVVMAPTTVLYSISPREMRETAAVARRL-GLRMHSHLS-------------G--KSPVAFCGEHDWLGSDVWYAHLVKVDADEIALLAQTGTGVAHCPQSNGRL-----PVREMADAGVPVSIGVDGAASNEAADMISEVHMTWLAQRARL---ASIAEVIHWGTAGGARVMGLD-EVGKVAVGYAADIAVYRLDDPRYFG--------LHDPAIGPVASGGRPSVMALFSAGKRVVVDD |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PAJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -235818 for 3389 contacts (-69.6/contact) +
2D Compatibility (PS) -40574 + (NN) -16893 + (LL) 3172
1D Compatibility (HY) -8800 + (ID) 3950
Total energy: -302863.0 ( -89.37 by residue)
QMean score : 0.450
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