Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIEADYLVIGAGIAGASTGYWLSAH-G--RVVVLEREAQPGYHSTGRSAAHYTVAYGTPQVRALTAASRAFFDNPPAGFCEHPLLSPRPEMVVDFSDD-PEELRRQYESGKALVPQMRLLDAEQACSIVPVLRRDK-----VFGATYDPTGADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRVDG-AWEVRCDAGSYRAAVLVNAAGAWCDAIAGLAGVRPLGLQPKRRSAFIFAPPPGIDCHDWPMLVSL-DESFYLKPDA--GMLLGSPANADPVEAHDVQPEQLDIATGMYLIEEATTLTIRRPEHTWAGLRSFVADGDLVAGYAANAEGFFWVAAQGGYGIQTSAAMGEASAALIRHQPLPAHLREHGLDEAMLSPRRLSP |
| 2GAG Chain:B ((20-390)) | -KSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW-LAGGNMARNTTIIRSNYLWDESAGIYEKSLKLWEQLPEDLEYDFLFSQRGVLNLAHTLGDVRESVRRVEANKLNGVDAEWLDPSQVKEACPIINTSDDIRYPVMGATWQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRGTIHAGKVALAGAGHSSVLAEMAGFE-LPIQSHPLQALVSELFEP----VHPTVVMSNHIHVYVSQAHKGELVMGAGIDSYNGYGQRGAFHVIQEQMA-AAVELFPIFARAHVLRTWGGIVDTTMDASPIISKTP-IQNLYVNCGWGTGGFKGTPGAGFTLAHTIANDEPHELNK-------PFSLERFE- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2GAG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -201077 for 3258 contacts (-61.7/contact) +
2D Compatibility (PS) -37730 + (NN) -9606 + (LL) 728
1D Compatibility (HY) -6000 + (ID) 3100
Total energy: -256785.0 ( -78.82 by residue)
QMean score : 0.425
|
|
|