Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRLEKVNKWYGAYHALADVDEQVGRGEVVVVCGPSGSGKSTLIRTLNRLEPIQGGRILIDGQDIHAPGLDLNRFRSHIGFVFQQFNLFPHLNVLDNCTLASLRLRGLKPAEARRQAMA---LLE-RVGLADKAAAFPARLSGGQQQRVAIARALAMEPPLMLFDEPTSALDPEMVGEVLLVMRDLARDGMTMVVVTHEMGFAHDVADRVLFMDAGRVLERASPDDFFNRPQHPRARKFLADIRTPFAQPL
2PMK Chain:A ((21-231))
----------------LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA--DPNWLRRQVGVVLQD-NVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQGKHKELLSEPE-------------------
General information:
TITO was launched using:
RESULT:
Template:
2PMK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113578 for 1528 contacts (-74.3/contact) +
2D Compatibility (PS) -21624 + (NN) -4833 + (LL) 3120
1D Compatibility (HY) -14400 + (ID) 3650
Total energy: -154965.0 ( -101.42 by residue)
QMean score : 0.386
(partial model without unconserved sides chains):
PDB file :
Tito_2PMK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PMK-query.scw
PDB file :
Tito_Scwrl_2PMK.pdb
: