Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDAISFRPMTEADLDAVLKIEYAAFSHP---WTR-----GIFSEGL----K-NYHCWLMFEGSQQVGHGVIQII-----LDEAHLLNITVKPESQGRGLGLRLLEHLMREAAGHQARECFLEVRASNQAAYRLYERYGFNEIGRRRDYYPAVGGREDALVMACTLFD
1YR0 Chain:A ((4-166))
---SVELRDATVDDLSGIMEIYNDAVVNTTAIWNEVVVDLENRKDWFAARTSRGFPVIVAILDGKVAGYASYGDWRAFDGYRHTREHSVYVHKDARGHGIGKRLMQALIDHAGGNDVHVLIAAIEAENTASIRLHESLGFRVVGRFSEVGTKFGRWLDLTCMELKL--
General information:
TITO was launched using:
RESULT:
Template:
1YR0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97204 for 1025 contacts (-94.8/contact) +
2D Compatibility (PS) -15785 + (NN) -6922 + (LL) 160
1D Compatibility (HY) -9200 + (ID) 1550
Total energy: -130501.0 ( -127.32 by residue)
QMean score : 0.419
(partial model without unconserved sides chains):
PDB file :
Tito_1YR0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YR0-query.scw
PDB file :
Tito_Scwrl_1YR0.pdb
: