Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDFSKWTGQVALISGAGSELGIGFAIARRLAREGVRLLITASSER-IRQRAEELSACGHDVRAASADLTDEAQVQGLLDWAEAQWGRVDILVNNAGMAQLDSAEPFSAVEATSLRD--WQLSLSRNLTSAFLLTRGLLP--GMRERGYGRIVNVASTTGTRGSNPGEAAYSAAKAGLVGWSMGLALEVAKSGITVNSVAPGWIAT--ASSTAEER-------------QAALASPSGRAGRPEEVAAAVAFLASPEASFVNGELLVVDGGNCLIENKRS
4DC0 Chain:A ((27-277))
---------EVALVTGATS--GIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAG-------RPGGGATA-ELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHA-APYSASKHGVVGFTKALGLELARTGITVNAVCPGWVETPMAASVREHYSDIWEVSTEEAFDRITARVPIGRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGG---------
General information:
TITO was launched using:
RESULT:
Template:
4DC0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118845 for 1984 contacts (-59.9/contact) +
2D Compatibility (PS) -26024 + (NN) -16899 + (LL) 1896
1D Compatibility (HY) -16000 + (ID) 5100
Total energy: -180972.0 ( -91.22 by residue)
QMean score : 0.592
(partial model without unconserved sides chains):
PDB file :
Tito_4DC0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DC0-query.scw
PDB file :
Tito_Scwrl_4DC0.pdb
: