Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKLLLLTLPLLSSLVHAAPGPAMTREGIVGGQEAHGNKWPWQVSLRANDTYWMHFCGGSLIHPQWVLTAAHCVGPDVADPNKVRVQLRKQYLYY---HDHLMTVSQIITHPDFYIVQDGADIALLKLTNPVNISDYVHPVPLPPASE---TFPSGTLCWVTGWGNIDNGVNLPPPFPLKEVQVPIIENHLCDLKYHKGLITGDNVHIVRDDMLCAGN--EGHDSCQGDSGGPLVCKVEDTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYVPKDF
4JZE Chain:H ((1-241))
----------------------------IVGGKVCPKGECPWQVLLLVNG---AQLCGGTLINTIWVVSAAHCFDK-IKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGA--TALELMVLNVPRLMTQDCLQQSRKVG----DSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMRS--
General information:
TITO was launched using:
RESULT:
Template:
4JZE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160116 for 1953 contacts (-82.0/contact) +
2D Compatibility (PS) -25797 + (NN) -14146 + (LL) 2544
1D Compatibility (HY) -17200 + (ID) 3950
Total energy: -218665.0 ( -111.96 by residue)
QMean score : 0.403
(partial model without unconserved sides chains):
PDB file :
Tito_4JZE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JZE-query.scw
PDB file :
Tito_Scwrl_4JZE.pdb
: