Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MMKKTFFVSLALALSLNAGNIQIQNMPKVKERISVPSKEDTIYSYHDSIKDSIKAVVNISTEKKIKNNFIGGGVFNDPFFQQFFGDLGGMIPKERMERALGSGVII-SKDGYIVTNNHVIDGADKIKVTIPGSNKEYSATLVGTDSESDLAVIRITKDNLPTIKFSDSNDILVGDLVFAIGNPFGVGESVTQGIVSALNKSGIGINSYENFIQTDASINPGNSGGALIDSRGGLVGINTAIISKTGGNHGIGFAIPSNMVKDIVTQLIKTGKIERGYLGVGLQDLSGDLQNSY---DNKEGAVVISVEKDSPAKKAGILVWDLITEVNGKKVKNTNELRNLIGSMLPNQRVTLKVIRDKKERTFTLTLAERKNPNKKETISAQNGVQGQLNGLQVEDLTQKTKRSMRLSDDVQGVLVSQVNENSPAEQAGFRQGNIITKIEEVEVKSVADFNHALEKYKGKPKRFLVLDLNQGYRIILVK |
3PV2 Chain:A ((6-439)) | -------------------------MP----------------SMAPVLKNIMPAIVNVAVQGYLPN---------------------------RKFESIGSGVIIDPNNGVIITNDHVIRNASLITVTLQ-DGRRLKARLIGGDSETDLAVLKIDAKNLKSLVIGDSDKLEVGDFVVAIGNPFGLSQSATFGIVSAL----------KNFIQTDAAINPGNSGGALVNAKGELIGINTAILV------GIGFAIPINMVKDVAQQIIKFGSIHRGLMGIFVQHLTPELAQAMGYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDNKPLTLSAVV-----TDIKSHEQKLQSNNPFLYGLALRAFEQESPPH----GNVIGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDVKSLQTIAQEKKKELLVQVLRGPGSMYLLVI-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PV2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -150515 for 3084 contacts (-48.8/contact) +
2D Compatibility (PS) -40489 + (NN) -5206 + (LL) 4704
1D Compatibility (HY) -31600 + (ID) 7550
Total energy: -230656.0 ( -74.79 by residue)
QMean score : 0.462
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