Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKILTVEDDKLIREGISEYLSEFGYT-VIQAKDGREALSKFNSD-INLVILDIQIPFINGLEVLKEIRK---KSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDSLIKKNFGHLEKFEYKNLSVNFNSYTAKINDEKIDVNAKELEILKCLLDNDGQVLTRMQIIDYVWKDSEEIPYDRVVDVYIKELRKKLQLDCITTIRNVGYKLERK
1BDJ Chain:A ((5-125))
LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKLGM--------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1BDJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86902 for 889 contacts (-97.8/contact) +
2D Compatibility (PS) -12654 + (NN) -5629 + (LL) 7504
1D Compatibility (HY) -10400 + (ID) 2150
Total energy: -110231.0 ( -123.99 by residue)
QMean score : 0.732
(partial model without unconserved sides chains):
PDB file :
Tito_1BDJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BDJ-query.scw
PDB file :
Tito_Scwrl_1BDJ.pdb
: