Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLVLAVLLTVAAADSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYCGLGGSGTPVDELDKCCQTHDNCYDQAKKLDSCKFLLDNPYTHTYSYSCSGSAITCSSKNKECEAFICNCDRNAAICFSKAPYNKAHKNLDTKKYCQS
1G4I Chain:A ((1-123))
----------------------ALWQFNGMIKCKIPSSEPLLDFNNYGCYCGLGGSGTPVDDLDRCCQTHDNCYKQAKKLDSCKVLVDNPYTNNYSYSCSNNEITCSSENNACEAFICNCDRNAAICFSKVPYNKEHKNLDKK-NC--
General information:
TITO was launched using:
RESULT:
Template:
1G4I.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68402 for 944 contacts (-72.5/contact) +
2D Compatibility (PS) -12777 + (NN) -6701 + (LL) 2372
1D Compatibility (HY) -16400 + (ID) 4850
Total energy: -106758.0 ( -113.09 by residue)
QMean score : 0.367
(partial model without unconserved sides chains):
PDB file :
Tito_1G4I.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G4I-query.scw
PDB file :
Tito_Scwrl_1G4I.pdb
: