Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKEIRNLKIASVLRRAISKVLMEGKVFNKNVVISDVKLSGDLKKADVYIVLSSLSKKKYNINTVVDEINQSAWLIRKSILSYVDLRFIPKLVFKADLAFDNFVNISKILSNYT
4TO0 Chain:A ((242-304))
--KEVGNLYDMFHTRNSLHRRAYQHKVGN----IIDTMITDAFLKADDYIEITGAGGKKYRISTAIDDMEAYTKLTDNIFLEILYSTDPKLKDAREILKQIEYRNLFKYVGETQ
General information:
TITO was launched using:
RESULT:
Template:
4TO0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4300 for 279 contacts (15.4/contact) +
2D Compatibility (PS) -6375 + (NN) -1163 + (LL) 676
1D Compatibility (HY) -1600 + (ID) 1050
Total energy: -5212.0 ( -18.68 by residue)
QMean score : 0.134
(partial model without unconserved sides chains):
PDB file :
Tito_4TO0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TO0-query.scw
PDB file :
Tito_Scwrl_4TO0.pdb
: