Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFKDFFNRTKKKKYLTVQDSKNNDVPAGIMTKCPKCKKIMYTKELAENLNVCFNCDHHIALTAYKRIEAISDEGSFTEFDKGMTSANPLDFPSYLEKIEKDQQKTGLKEAVVTGTAQLDGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFILFSASGGARMQEG---IISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVSASFA---SVGDINLSEPKALIGFAGRRVIEQTIN-EKL-----------------PDDFQTAEFLLEHGQLDKVVHRNDMRQTLSEILKIHQEVTK |
| 1VRG Chain:A ((289-513)) | -------------------------------------------------------NPNKGYDVRDVIKRVVDHGEFFEVQPY------------------------FAKNIVIGFARIQGKTVGIVANQPSVLAGVLDIDSSDKAARFIRFLDAFNIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYA---YSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAVMGPEGAANIIFKREIEASSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVIDPRETRKYIMRALEVCETK-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VRG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -102782 for 1647 contacts (-62.4/contact) +
2D Compatibility (PS) -21506 + (NN) -5026 + (LL) 5104
1D Compatibility (HY) -5600 + (ID) 1800
Total energy: -131610.0 ( -79.91 by residue)
QMean score : 0.470
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