Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALVVKDIVKNFGEGLSETKVLKGINFEVEQGEFVILNGASGSGKTTLLTILGGLLSQTSGTVLYN--DAPLFDKQHRPSDLRLEDIGFIFQSSHLVPYLKVIEQLTLVGQEAGMTKQQSSTRAIQLLKNIGLEDRLN--------VYPHQ---LSGGEKQRVAIMRAFMNNPKIILADEPTASLDADRATKVVEMIRQQIKEQQMIGIMITHDRRLFEYADRVIELEDGKITD
2FFB Chain:A ((24-223))
--------------------ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD----PNWLRRQ-VGVVLQDNVLLNR-SIIDNISLA--NPGM----SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICKGRTV--IIIAHRLSTVKNADRIIVMEKGKIVE
General information:
TITO was launched using:
RESULT:
Template:
2FFB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107147 for 1401 contacts (-76.5/contact) +
2D Compatibility (PS) -19855 + (NN) -6136 + (LL) 2304
1D Compatibility (HY) -16400 + (ID) 3350
Total energy: -150584.0 ( -107.48 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_2FFB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FFB-query.scw
PDB file :
Tito_Scwrl_2FFB.pdb
: