Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIAMANFKSAMPVFKSHAYLKELEKTLKPQHFD---RVFVFPDFLGL-LPNAFL---HFTLGAQNAYPRDCGAFTGEITSKHLEELKIHTLLIGHSERRVLLKESPSFLKEKFDFFKGKNFKIVYCIGEDLTTREKG---------FRAVKEFLSEQLENIDLNYSNLIVAYEPIWAIGTKKSASLEDIYLTHGFLKQILNQK--------TPLLYGGSVNAQNAKEILGIDSVDGLLIGSASLELENFKTIISFL
4HHP Chain:A ((8-242))
---IAAANWKCN----GSESLLVPLIETLNAATFDHDVQCVVAPTFLHIPMTKARLTNPKFQIAAQNAITRS-GAFTGEVSLQILKDYGISWVVLGHSERRLYYGDTNEIVAEKVAQACAAGFHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEA------WSRVVIAYEPVWAIGTGKVATPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGGSVTAKNARTLYQMRDINGFLVGGASLKPEFVEIIEATK
General information:
TITO was launched using:
RESULT:
Template:
4HHP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119920 for 1645 contacts (-72.9/contact) +
2D Compatibility (PS) -22302 + (NN) -6935 + (LL) 1020
1D Compatibility (HY) -20800 + (ID) 4100
Total energy: -173037.0 ( -105.19 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_4HHP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HHP-query.scw
PDB file :
Tito_Scwrl_4HHP.pdb
: