Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEGFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKHLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSIWMLEAHLA
1N1Q Chain:A ((7-149))
QLVAVLLNRQVANWVVLYVKLHNFHWNVNGPNFFTLHEKFEELYTEASGHIDTLAERVLSIGGSPIATLAASLEEASIKEATGG-ESAAEMVSSVVNDFVDLVGELKVARDVADEADDEATADMLDAIEAGLEKHVWMLEAFLE
General information:
TITO was launched using:
RESULT:
Template:
1N1Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47763 for 1100 contacts (-43.4/contact) +
2D Compatibility (PS) -15585 + (NN) -10562 + (LL) -28
1D Compatibility (HY) -10800 + (ID) 2400
Total energy: -87138.0 ( -79.22 by residue)
QMean score : 0.663
(partial model without unconserved sides chains):
PDB file :
Tito_1N1Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N1Q-query.scw
PDB file :
Tito_Scwrl_1N1Q.pdb
: