Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEE-GVREAIAKLDNTDFMGRTIRVTEANPKKS
3MD3 Chain:A ((89-165))
--NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK---
General information:
TITO was launched using:
RESULT:
Template:
3MD3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48506 for 527 contacts (-92.0/contact) +
2D Compatibility (PS) -8246 + (NN) -3020 + (LL) 260
1D Compatibility (HY) -6800 + (ID) 950
Total energy: -67262.0 ( -127.63 by residue)
QMean score : 0.723
(partial model without unconserved sides chains):
PDB file :
Tito_3MD3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MD3-query.scw
PDB file :
Tito_Scwrl_3MD3.pdb
: