Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYLNNDFEDLMKNRRSIREYDETVKISQEEMKAILEDAVTAPSSVNMQPWRFVVVESDAGKEKLSSLVRFNTRQNESSSAMILVFGDLQNFENGEKIYGESVERGLMPAEVKEQQMAKLSQYFASIPRSEAERVVLIDGGIVAMQLMLVARAHGYDTNPIGGFERTEVAEAFNMDPERYVPVMIVSIGKAKNSG--YQSYRLPITDVTTFA
3BEM Chain:A ((13-218))
----MAEFTHLVNERRSASNFLSGHPITKEDLNEMFELVALAPSAFNLQHTKYVTVLDQDVKEKLKQ-AANGQYKVVSSSAVLLVLGDKQAYQQAADIYEGLKVLGILNKQEYDHMVQDTVSFYENRGEQFKRDEAIRNASLSAMMFMLSAAAAGWDTCPMIGFDAEAVKRILNID-DQFEVVMMITIGKEKTESRRPRGYRKPVNEFVEYM
General information:
TITO was launched using:
RESULT:
Template:
3BEM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80351 for 1475 contacts (-54.5/contact) +
2D Compatibility (PS) -22172 + (NN) -11228 + (LL) 564
1D Compatibility (HY) -11600 + (ID) 2750
Total energy: -127537.0 ( -86.47 by residue)
QMean score : 0.613
(partial model without unconserved sides chains):
PDB file :
Tito_3BEM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BEM-query.scw
PDB file :
Tito_Scwrl_3BEM.pdb
: